CDS
| Accession Number | TCMCG011C14299 |
| gbkey | CDS |
| Protein Id | XP_021898828.1 |
| Location | join(1259697..1259708,1259796..1259912,1260100..1260158,1260339..1260398,1260573..1260626,1260754..1260802,1260885..1260932,1261101..1261166,1261317..1261367,1261688..1261807,1261881..1261965,1262140..1262221,1265103..1265217,1265312..1265368,1265499..1265545,1265669..1265723,1267511..1267582) |
| Gene | LOC110815360 |
| GeneID | 110815360 |
| Organism | Carica papaya |
Protein
| Length | 382aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA264084 |
| db_source | XM_022043136.1 |
| Definition | flap endonuclease 1 [Carica papaya] |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGGTATAAAGGGTTTAACAAAGCTTCTAGCGGACAATGCCCCAAAGGCTATGAAAGAGCAGAAATTTGAGAGCTACTTCGGTCGTAAGATTGCAATTGATGCTAGCATGAGTATCTATCAGTTCCTTATTGTAGTGGGAAGAAGCGGGACTGAGATGCTCACAAATGAAGCTGGTGAAGTCACCAGTCACTTGCAGGGCATGTTCACTCGCACCATTCGGCTTCTTGAAGCTGGAATGAAGCCTCTGTATGTTTTTGATGGGAAGCCTCCTGATTTGAAGAAGCAAGAGCTGGCAAAGCGTTACTCAAAGAGGGCTGATGCTACTGAGGATTTGGCTGATGCCGTGGAGATTGGAAATAAAGAAGACATCGAGAAATTCAGTAAAAGAACAGTAAAGGTAACACAGCAGCACAATGAGGACTGCAAAAGACTTTTAAGACTTATGGGAGTGCCAGTAATCGAGGCTCCTTCCGAAGCAGAGGCACAATGTGCTGCACTTTGCAAATCAGGAAAGATTTATGCTGTGGCTTCCGAAGACATGGACTCCCTAACTTTTGGAGCACCTAGATTTCTTCGCCATTTAATGGATCCAAGCTCAAGAAAAGTCCCTGTCATGGAATTTGAAATTGCCAAGATTTTGGATGAACTCAGCCTTACAATGGATCAGTTTATTGATTTGTGCATTCTCTCTGGTTGTGATTATTGTGACAGCATTCGAGGTATTGGAGGACTAACTGCACTGAAGCTCATGCGTCAACATGGCTCTATAGAGAAAATACTGGAAAACATTAACAAAGAGAGGTACCAAATACCAGATGATTGGCCCTATCAAGAAGCTCGACAGCTGTTTAAAGAACCAGTGGTTTTAACTAATGAGGAGCAACTTGATGTTAAGTGGACTGCTCCGGATGAGGAGGGGTTAATTAACTTTCTGGTAAATGAGAATGGGTTCAACAGTGACAGAGTGACGAAGGCTATTGAAAAAATTAAAGCGGCCAAGAATAAGTCATCACAGGGCCGATTGGAATCATTTTTTAAGCCAGTTGCTAACACATCTACTACTATCAAACGAAAGGGAACACCTAAGGTCACTGCTAAAGAAAGTACTATTAAGAAATCAAAGGTAGCTGGTGGTAGGAAGAAGTAG |
| Protein: MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPLYVFDGKPPDLKKQELAKRYSKRADATEDLADAVEIGNKEDIEKFSKRTVKVTQQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKIYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEFEIAKILDELSLTMDQFIDLCILSGCDYCDSIRGIGGLTALKLMRQHGSIEKILENINKERYQIPDDWPYQEARQLFKEPVVLTNEEQLDVKWTAPDEEGLINFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSTTIKRKGTPKVTAKESTIKKSKVAGGRKK |